STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH64171.1Putative tricarboxylic transport membrane protein. (502 aa)    
Predicted Functional Partners:
SEH64144.1
Putative tricarboxylic transport membrane protein.
 
 
 0.997
SEH64156.1
Putative tricarboxylic transport membrane protein.
 
 
 0.996
SEH64202.1
Two-component system, CitB family, response regulator.
 
     0.868
SEH64184.1
Two-component system, CitB family, sensor kinase.
 
     0.847
SEH64128.1
Phosphate-selective porin OprO and OprP.
       0.751
SEI01900.1
TRAP transporter, DctM subunit.
  
  
  0.699
SEI01915.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
  
  0.664
SEI01907.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.650
SEI01894.1
Transcriptional regulator, IclR family.
 
     0.484
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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