STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH64323.1Predicted arabinose efflux permease, MFS family. (392 aa)    
Predicted Functional Partners:
SEH64336.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
       0.773
SEH64350.1
Ketosteroid isomerase homolog.
       0.773
SEH64309.1
Uracil-DNA glycosylase.
       0.755
SEI05603.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.748
SEI05611.1
Acyl transferase domain-containing protein.
    
 0.712
SEI00231.1
Amino acid adenylation domain-containing protein.
 
 
 0.575
SEI05947.1
Chorismate mutase.
     
 0.572
SEH64297.1
Glycine/D-amino acid oxidase.
       0.537
SEI14412.1
HxxPF-repeated domain-containing protein.
    
 0.523
SEI06007.1
Chorismate mutase.
    
  0.518
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.