STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH66444.1Polar amino acid transport system substrate-binding protein. (252 aa)    
Predicted Functional Partners:
SEH92563.1
Signal transduction histidine kinase.
   
 0.854
SEI06414.1
Signal transduction histidine kinase.
   
 0.795
SEI09449.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
   
 0.795
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.788
SEH57775.1
Na+/proline symporter.
  
 0.784
SEH95315.1
Na+/proline symporter.
  
 0.784
SEH93267.1
Response regulator receiver domain-containing protein.
   
 0.768
SEI07988.1
PAS domain S-box-containing protein.
   
 0.768
SEI10015.1
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-).
  
     0.745
SEI13283.1
ABC-type amino acid transport substrate-binding protein.
  
     0.743
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.