STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH67859.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (454 aa)    
Predicted Functional Partners:
SEH74894.1
PAS domain S-box-containing protein.
  
 0.953
SEH67848.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.943
SEH92563.1
Signal transduction histidine kinase.
  
 0.916
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.908
SEI08986.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.886
SEH84358.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 0.877
SEH74054.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.872
SEI06414.1
Signal transduction histidine kinase.
  
 0.868
SEI09449.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
 0.868
SEH92260.1
PAS domain S-box-containing protein.
  
 0.866
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.