STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH67969.1Na+/H+ antiporter NhaD. (367 aa)    
Predicted Functional Partners:
SEH57160.1
Transcriptional regulator, ArsR family; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.770
SEH96994.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
 0.609
SEI11021.1
Arsenite-transporting ATPase.
    
 0.603
SEH67982.1
Hypothetical protein.
       0.541
SEH63707.1
TrkA-C domain-containing protein.
 
   
 0.488
SEI05611.1
Acyl transferase domain-containing protein.
     
 0.485
SEI10763.1
Transcriptional regulator, Spx/MgsR family; Belongs to the ArsC family.
    
 0.443
SEI10918.1
Arsenate reductase.
    
 0.443
SEH93043.1
Di-and tricarboxylate transporters.
 
   
 0.434
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
    0.426
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.