STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH71809.1Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (531 aa)    
Predicted Functional Partners:
SEH71836.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.991
SEH71823.1
Polysaccharide export outer membrane protein.
 
 0.988
SEH71797.1
Receptor protein-tyrosine kinase.
 
 0.981
SEI01716.1
Uncharacterised nucleotidyltransferase.
 
 0.959
SEH89253.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.953
SEH98918.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 
 0.909
SEH71873.1
Sugar transferase, PEP-CTERM/EpsH1 system associated.
 
 
 0.894
SEH71846.1
Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.
 
     0.893
SEH71885.1
Exosortase A.
 
     0.889
SEH71952.1
Probable O-glycosylation ligase, exosortase A-associated.
 
  
 0.889
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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