STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH72756.1Mu-like prophage protein gp46. (148 aa)    
Predicted Functional Partners:
SEH72770.1
Phage baseplate assembly protein V.
  
    0.852
SEH72802.1
Mu-like prophage DNA circulation protein.
  
    0.829
SEH72742.1
Uncharacterized phage protein gp47/JayE.
  
    0.819
SEH72788.1
Mu-like prophage tail protein gpP.
  
    0.816
SEH72727.1
Uncharacterized protein YmfQ in lambdoid prophage, DUF2313 family.
  
    0.815
SEH72815.1
Hypothetical protein.
       0.746
SEH72718.1
Hypothetical protein.
       0.605
SEH72839.1
Phage tail tube protein.
  
    0.557
SEH72853.1
Mu-like prophage tail sheath protein gpL.
  
    0.540
SEH72824.1
Mu-like prophage FluMu protein gp41.
  
    0.521
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.