STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH73112.1Mu-like prophage protein gp16. (194 aa)    
Predicted Functional Partners:
SEH73192.1
Protein of unknown function.
 
    0.913
SEH72965.1
Mu-like prophage protein gp29.
 
    0.910
SEH72977.1
Mu-like prophage FluMu protein gp28.
 
     0.910
SEH73003.1
Hypothetical protein.
 
     0.910
SEH72952.1
Uncharacterized conserved protein, contains phage Mu gpF-like domain.
 
     0.909
SEH73233.1
Hypothetical protein.
 
    0.899
SEH73249.1
Mu DNA-binding domain-containing protein.
 
    0.890
SEH73267.1
Transcriptional regulator, Nlp family.
 
     0.874
SEH72928.1
Mu-like prophage major head subunit gpT.
 
    0.861
SEH72939.1
Mu-like prophage I protein.
 
     0.857
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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