STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH78842.1Short-chain dehydrogenase. (245 aa)    
Predicted Functional Partners:
SEI05603.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.974
SEI05611.1
Acyl transferase domain-containing protein.
  
 0.970
SEI05577.1
Amino acid adenylation domain-containing protein.
  
 0.944
SEI09483.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.916
SEI00231.1
Amino acid adenylation domain-containing protein.
  
 
 0.909
SEH78867.1
Chalcone isomerase-like.
 
     0.907
SEH84691.1
Protein of unknown function.
 
    0.893
SEI05593.1
Taurine dioxygenase, alpha-ketoglutarate-dependent.
  
 
 0.875
SEI10826.1
SnoaL-like domain-containing protein.
 
  
 0.858
SEH78856.1
Protein of unknown function.
     
 0.798
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.