Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH80076.1 | SEH80083.1 | SAMN05660691_01528 | SAMN05660691_01529 | Hypothetical protein. | Uncharacterized radical SAM protein YgiQ. | 0.492 |
SEH80076.1 | SEH80097.1 | SAMN05660691_01528 | SAMN05660691_01530 | Hypothetical protein. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.492 |
SEH80083.1 | SEH80076.1 | SAMN05660691_01529 | SAMN05660691_01528 | Uncharacterized radical SAM protein YgiQ. | Hypothetical protein. | 0.492 |
SEH80083.1 | SEH80097.1 | SAMN05660691_01529 | SAMN05660691_01530 | Uncharacterized radical SAM protein YgiQ. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.773 |
SEH80083.1 | SEH80108.1 | SAMN05660691_01529 | SAMN05660691_01531 | Uncharacterized radical SAM protein YgiQ. | Hypothetical protein. | 0.495 |
SEH80083.1 | SEH80121.1 | SAMN05660691_01529 | SAMN05660691_01532 | Uncharacterized radical SAM protein YgiQ. | Penicillin-binding protein 1C. | 0.437 |
SEH80097.1 | SEH80076.1 | SAMN05660691_01530 | SAMN05660691_01528 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Hypothetical protein. | 0.492 |
SEH80097.1 | SEH80083.1 | SAMN05660691_01530 | SAMN05660691_01529 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Uncharacterized radical SAM protein YgiQ. | 0.773 |
SEH80097.1 | SEH80108.1 | SAMN05660691_01530 | SAMN05660691_01531 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Hypothetical protein. | 0.495 |
SEH80097.1 | SEH80121.1 | SAMN05660691_01530 | SAMN05660691_01532 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Penicillin-binding protein 1C. | 0.437 |
SEH80097.1 | bioD | SAMN05660691_01530 | SAMN05660691_02503 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.570 |
SEH80097.1 | galK | SAMN05660691_01530 | SAMN05660691_01801 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily. | 0.625 |
SEH80097.1 | gcvP | SAMN05660691_01530 | SAMN05660691_01458 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.405 |
SEH80108.1 | SEH80083.1 | SAMN05660691_01531 | SAMN05660691_01529 | Hypothetical protein. | Uncharacterized radical SAM protein YgiQ. | 0.495 |
SEH80108.1 | SEH80097.1 | SAMN05660691_01531 | SAMN05660691_01530 | Hypothetical protein. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.495 |
SEH80108.1 | SEH80121.1 | SAMN05660691_01531 | SAMN05660691_01532 | Hypothetical protein. | Penicillin-binding protein 1C. | 0.977 |
SEH80121.1 | SEH80083.1 | SAMN05660691_01532 | SAMN05660691_01529 | Penicillin-binding protein 1C. | Uncharacterized radical SAM protein YgiQ. | 0.437 |
SEH80121.1 | SEH80097.1 | SAMN05660691_01532 | SAMN05660691_01530 | Penicillin-binding protein 1C. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.437 |
SEH80121.1 | SEH80108.1 | SAMN05660691_01532 | SAMN05660691_01531 | Penicillin-binding protein 1C. | Hypothetical protein. | 0.977 |
bioD | SEH80097.1 | SAMN05660691_02503 | SAMN05660691_01530 | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.570 |
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