STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH80241.1Two component transcriptional regulator, LytTR family. (237 aa)    
Predicted Functional Partners:
SEH80251.1
Histidine kinase.
 
 0.973
SEH60624.1
Two-component system, LytT family, sensor histidine kinase AlgZ.
 
 
 0.919
SEH89775.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.894
SEH73733.1
Histidine kinase.
 0.886
SEI07031.1
Histidine kinase.
 
 0.886
SEI07036.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.886
SEH92563.1
Signal transduction histidine kinase.
    
 0.807
SEI13276.1
Signal transduction histidine kinase.
 
  
 0.783
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
 0.727
SEH80261.1
Superinfection immunity protein.
       0.605
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.