STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH85391.1Uncharacterized protein YacL, UPF0231 family. (129 aa)    
Predicted Functional Partners:
SEH87899.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
    
   0.717
SEI05031.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
    
   0.717
SEI05047.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
    
   0.717
SEH85360.1
Ammonium transporter, Amt family.
       0.504
SEH85377.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
       0.503
SEH85406.1
Aconitase; Belongs to the aconitase/IPM isomerase family.
       0.496
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.