STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH87806.1Cobalt-zinc-cadmium efflux system protein. (315 aa)    
Predicted Functional Partners:
SEH67828.1
Hypothetical protein.
   
    0.550
SEH84635.1
Hypothetical protein.
   
    0.550
SEH87820.1
Lipid-binding SYLF domain-containing protein.
       0.548
SEH90087.1
Cation efflux family protein.
 
     0.547
SEH57122.1
Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
0.542
SEH87791.1
Alanine or glycine:cation symporter, AGCS family.
       0.531
SEH57487.1
Zinc transporter, ZIP family.
 
 
 
 0.465
xylB
Xylulokinase.
   
    0.405
SEH74759.1
Cu+-exporting ATPase.
  
  
 0.404
SEI13660.1
Cu+-exporting ATPase.
  
  
 0.404
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.