STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH87952.1Hypothetical protein. (161 aa)    
Predicted Functional Partners:
SEH87912.1
Hypothetical protein.
 
     0.918
SEH87962.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.880
SEH87972.1
Cytochrome c oxidase cbb3-type subunit 4.
 
     0.863
SEH87939.1
Cu2+-exporting ATPase.
 
    0.851
SEH87926.1
Cytochrome oxidase maturation protein, cbb3-type.
 
     0.836
SEH87985.1
Cytochrome c oxidase cbb3-type subunit 2.
 
    0.764
SEH88000.1
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.746
SEH67761.1
Cytochrome c oxidase accessory protein FixG.
 
    0.720
SEH87899.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
       0.693
SEH73406.1
Uncharacterized membrane protein SirB2.
  
     0.676
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.