STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH88024.1Glucose-6-phosphate 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family. (282 aa)    
Predicted Functional Partners:
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
      0.909
SEH88671.1
Phosphoglucomutase.
     
 0.902
SEH79019.1
Membrane-bound lytic murein transglycosylase B.
 
      0.899
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.896
glk
Glucokinase; Belongs to the bacterial glucokinase family.
    
  0.889
SEH80345.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.842
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
  0.841
SEH89163.1
Phosphomannomutase.
    
 0.828
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
  
  0.796
SEI01865.1
Altronate hydrolase.
    
  0.639
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.