STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH88697.1Tetrapyrrole (Corrin/Porphyrin) Methylases. (263 aa)    
Predicted Functional Partners:
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
  0.946
SEH92563.1
Signal transduction histidine kinase.
    
  0.928
SEH92260.1
PAS domain S-box-containing protein.
    
  0.924
SEI06414.1
Signal transduction histidine kinase.
    
  0.824
SEI09449.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
    
  0.824
SEH72211.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
  
  0.807
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.793
SEH93267.1
Response regulator receiver domain-containing protein.
    
  0.792
SEH67108.1
DNA-binding winged helix-turn-helix (wHTH) domain-containing protein.
  
  
  0.790
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.787
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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