STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH89219.1Fucose 4-O-acetylase. (349 aa)    
Predicted Functional Partners:
SEH89253.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.914
SEH71836.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.853
SEH89230.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.808
SEH89245.1
Hypothetical protein.
       0.799
SEH89204.1
Endo-1,4-beta-xylanase.
       0.773
SEH89148.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.770
SEH89279.1
Polysaccharide export outer membrane protein.
  
  
 0.768
SEH71952.1
Probable O-glycosylation ligase, exosortase A-associated.
  
    0.728
SEH89292.1
Capsular exopolysaccharide family.
  
  
 0.724
SEH89191.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.696
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.