STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH91405.1Protein of unknown function. (284 aa)    
Predicted Functional Partners:
SEH92273.1
single-stranded-DNA-specific exonuclease.
    
 
 0.961
SEH80447.1
Hypothetical protein.
  
     0.647
SEH91414.1
NTE family protein.
       0.592
SEH58173.1
TonB-dependent receptor.
  
     0.444
SEH94677.1
Peptidoglycan-binding protein, CsiV.
  
     0.435
SEH66977.1
TonB-dependent receptor.
  
     0.421
SEI01633.1
RNA-binding protein.
   
    0.406
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.