STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH96545.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
SEH96536.1
Hypothetical protein.
       0.773
SEH96558.1
Zonular occludens toxin (Zot).
       0.773
SEH96528.1
Phage major coat protein, Gp8.
       0.723
SEH96503.1
Hypothetical protein.
       0.462
SEH96515.1
Hypothetical protein.
       0.462
SEH96440.1
Hypothetical protein.
       0.451
SEH96449.1
Hypothetical protein.
       0.451
SEH96461.1
Hypothetical protein.
       0.451
SEH96473.1
Phage/plasmid replication protein, gene II/X family.
       0.451
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.