STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI01907.1TRAP-type C4-dicarboxylate transport system, small permease component. (166 aa)    
Predicted Functional Partners:
SEI01900.1
TRAP transporter, DctM subunit.
 
 0.999
SEI01915.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.995
SEI01894.1
Transcriptional regulator, IclR family.
 
   
 0.737
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.713
SEH64171.1
Putative tricarboxylic transport membrane protein.
  
  
  0.650
SEI01885.1
Transcriptional regulator, LacI family.
       0.608
SEI01931.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
     0.576
SEI01873.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.539
SEH67283.1
HAMP domain-containing protein.
    
  0.496
SEH74824.1
Signal transduction histidine kinase.
    
  0.496
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.