STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI04996.1Osmotically-inducible protein OsmY, contains BON domain. (280 aa)    
Predicted Functional Partners:
SEI03317.1
Hypothetical protein.
 
    0.816
SEI10809.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
 
    0.794
SEH66861.1
Uncharacterized membrane protein YtjA, UPF0391 family.
  
    0.715
SEI05055.1
BON domain-containing protein.
 
    0.650
SEI05063.1
Hypothetical protein.
 
     0.599
SEI05012.1
Protein of unknown function.
 
    0.552
SEI05002.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.548
SEI04959.1
Hypothetical protein.
       0.496
SEI04968.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
       0.496
SEI04978.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
       0.496
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.