STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI06650.1Choline dehydrogenase. (559 aa)    
Predicted Functional Partners:
SEI06642.1
Gluconate 2-dehydrogenase subunit 3.
 
  
  0.958
SEI06657.1
Protein of unknown function.
 
     0.949
SEH66515.1
Hypothetical protein.
    
 0.898
SEH94378.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 0.883
SEI05611.1
Acyl transferase domain-containing protein.
    
 0.859
SEI04687.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.837
SEH55658.1
Gluconate 2-dehydrogenase subunit 3.
 
  
  0.825
SEI10435.1
Hypothetical protein.
   
 
 0.817
SEH74098.1
High-affinity iron transporter.
   
 0.816
SEH87962.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 0.816
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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