STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI07068.1Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
SEI07061.1
Ribosome-associated protein.
       0.732
SEI07075.1
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase.
       0.509
SEI12113.1
ANTAR domain-containing protein.
  
     0.459
SEI03302.1
DNA-binding regulatory protein, YebC/PmpR family.
  
     0.455
SEH88607.1
Hypothetical protein.
  
     0.445
SEH64647.1
Two-component system, NtrC family, sensor histidine kinase GlrK.
  
     0.436
SEH94866.1
Succinate dehydrogenase / fumarate reductase membrane anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.436
SEI10780.1
Nucleoid-associated protein.
  
     0.436
SEI07057.1
Sugar-phosphatase.
       0.432
SEH57517.1
Protease-3; Belongs to the peptidase M16 family.
  
     0.423
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.