STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI08196.1Helix-turn-helix domain-containing protein. (96 aa)    
Predicted Functional Partners:
SEH74331.1
Serine/threonine-protein kinase HipA.
  
 
 0.779
SEI08203.1
Protein of unknown function.
       0.773
SEH73552.1
Predicted ABC-type ATPase.
    
 
 0.762
SEH94959.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
 
  0.752
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
    
  0.738
SEI08210.1
DNA repair protein RadC.
       0.682
SEI10732.1
Tetratricopeptide repeat-containing protein.
   
 0.578
SEI08188.1
Virus viroplasmin.
       0.566
SEI08217.1
Hypothetical protein.
       0.499
SEI05947.1
Chorismate mutase.
    
 0.485
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.