Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH59657.1 | SEH91519.1 | SAMN05660691_00408 | SAMN05660691_02111 | Opacity protein. | Outer membrane protein; Belongs to the skp family. | 0.822 |
SEH59657.1 | SEI08676.1 | SAMN05660691_00408 | SAMN05660691_03481 | Opacity protein. | OmpA-OmpF porin, OOP family. | 0.690 |
SEH79529.1 | SEH91519.1 | SAMN05660691_01479 | SAMN05660691_02111 | Outer membrane protein OmpA. | Outer membrane protein; Belongs to the skp family. | 0.755 |
SEH79529.1 | SEH92916.1 | SAMN05660691_01479 | SAMN05660691_02230 | Outer membrane protein OmpA. | WD40-like Beta Propeller Repeat. | 0.531 |
SEH79529.1 | SEH97080.1 | SAMN05660691_01479 | SAMN05660691_02493 | Outer membrane protein OmpA. | PKD domain-containing protein; Belongs to the peptidase S8 family. | 0.770 |
SEH79529.1 | SEH99425.1 | SAMN05660691_01479 | SAMN05660691_02661 | Outer membrane protein OmpA. | Chemotaxis protein MotB. | 0.743 |
SEH79529.1 | SEI08676.1 | SAMN05660691_01479 | SAMN05660691_03481 | Outer membrane protein OmpA. | OmpA-OmpF porin, OOP family. | 0.697 |
SEH79529.1 | guaA | SAMN05660691_01479 | SAMN05660691_00401 | Outer membrane protein OmpA. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.750 |
SEH79529.1 | tolB | SAMN05660691_01479 | SAMN05660691_02971 | Outer membrane protein OmpA. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.853 |
SEH91519.1 | SEH59657.1 | SAMN05660691_02111 | SAMN05660691_00408 | Outer membrane protein; Belongs to the skp family. | Opacity protein. | 0.822 |
SEH91519.1 | SEH79529.1 | SAMN05660691_02111 | SAMN05660691_01479 | Outer membrane protein; Belongs to the skp family. | Outer membrane protein OmpA. | 0.755 |
SEH91519.1 | SEI08676.1 | SAMN05660691_02111 | SAMN05660691_03481 | Outer membrane protein; Belongs to the skp family. | OmpA-OmpF porin, OOP family. | 0.755 |
SEH91519.1 | bamA | SAMN05660691_02111 | SAMN05660691_02112 | Outer membrane protein; Belongs to the skp family. | Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.978 |
SEH92916.1 | SEH79529.1 | SAMN05660691_02230 | SAMN05660691_01479 | WD40-like Beta Propeller Repeat. | Outer membrane protein OmpA. | 0.531 |
SEH92916.1 | SEI08676.1 | SAMN05660691_02230 | SAMN05660691_03481 | WD40-like Beta Propeller Repeat. | OmpA-OmpF porin, OOP family. | 0.594 |
SEH94707.1 | SEI08676.1 | SAMN05660691_02341 | SAMN05660691_03481 | Lipoprotein-releasing system permease protein. | OmpA-OmpF porin, OOP family. | 0.610 |
SEH94707.1 | bamA | SAMN05660691_02341 | SAMN05660691_02112 | Lipoprotein-releasing system permease protein. | Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.801 |
SEH94707.1 | tolB | SAMN05660691_02341 | SAMN05660691_02971 | Lipoprotein-releasing system permease protein. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.642 |
SEH97080.1 | SEH79529.1 | SAMN05660691_02493 | SAMN05660691_01479 | PKD domain-containing protein; Belongs to the peptidase S8 family. | Outer membrane protein OmpA. | 0.770 |
SEH97080.1 | SEI08676.1 | SAMN05660691_02493 | SAMN05660691_03481 | PKD domain-containing protein; Belongs to the peptidase S8 family. | OmpA-OmpF porin, OOP family. | 0.770 |
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