STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI08998.1PTS IIA-like nitrogen-regulatory protein PtsN. (157 aa)    
Predicted Functional Partners:
SEI09011.1
Phosphocarrier protein NPr.
 
 
 0.985
SEI08993.1
Putative sigma-54 modulation protein.
 
  
 0.980
SEI10758.1
Phosphotransferase system IIA component.
  
 
 0.975
SEI09004.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.974
SEI08986.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.900
SEI05728.1
Phosphotransferase system, enzyme I, PtsP; Belongs to the PEP-utilizing enzyme family.
  
   
 0.809
SEI01845.1
Fructuronate reductase.
  
 
 0.736
SEI08971.1
Lipopolysaccharide export system protein LptA.
  
  
 0.695
SEI08977.1
Lipopolysaccharide export system ATP-binding protein.
     
 0.674
SEI08947.1
Arabinose-5-phosphate isomerase.
  
  
 0.646
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.