STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI09720.1Hypothetical protein; Belongs to the UPF0229 family. (422 aa)    
Predicted Functional Partners:
SEI09713.1
Putative serine protein kinase, PrkA.
  
 0.998
SEI09724.1
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.
 
  
 0.994
SEI08653.1
PhoH-like ATPase.
   
    0.680
SEH80502.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.582
SEI09705.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.431
SEH94487.1
Aldo/keto reductase.
   
    0.412
SEH64597.1
Putative intracellular protease/amidase.
   
    0.408
SEI12210.1
LysM domain-containing protein.
   
    0.406
SEH75037.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
    0.404
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.