STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI09724.1Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation. (508 aa)    
Predicted Functional Partners:
SEI09713.1
Putative serine protein kinase, PrkA.
 
  
 0.994
SEI09720.1
Hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.994
SEI02717.1
Protein of unknown function.
   
    0.704
SEH80502.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.685
SEI07120.1
Apolipoprotein D and lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.684
SEH59381.1
Barstar (barnase inhibitor).
   
    0.630
SEI08653.1
PhoH-like ATPase.
   
    0.614
SEH58930.1
Predicted extracellular nuclease.
   
    0.559
SEH80209.1
Hypothetical protein.
   
    0.559
SEI03525.1
Hypothetical protein.
   
    0.559
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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