STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI11907.1Putative ABC transport system ATP-binding protein. (232 aa)    
Predicted Functional Partners:
SEH67895.1
Putative ABC transport system permease protein.
 
 0.999
SEH99285.1
Putative ABC transport system permease protein.
 0.996
SEI11894.1
Putative ABC transport system permease protein.
 
 0.989
SEI11901.1
Putative ABC transport system permease protein.
 
 0.985
SEH60909.1
Putative ABC transport system permease protein.
  
 0.946
SEH94707.1
Lipoprotein-releasing system permease protein.
 
 0.943
SEH94728.1
Lipoprotein-releasing system permease protein.
 
 0.943
SEI11913.1
HlyD family secretion protein.
 
 0.935
SEH77687.1
Cationic peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.907
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.902
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.