STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI12432.1Iron complex outermembrane recepter protein. (832 aa)    
Predicted Functional Partners:
SEI04292.1
Iron complex outermembrane recepter protein.
  
 
 0.716
SEH91325.1
TonB dependent receptor.
  
  
  0.702
SEH57750.1
Iron complex outermembrane recepter protein.
  
 
 0.656
SEH67470.1
Fucose permease.
  
     0.588
SEI02675.1
Iron complex outermembrane recepter protein.
  
  
  0.583
SEI05252.1
Hypothetical protein.
 
  0.534
SEH67523.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.530
SEH80438.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.524
SEH56124.1
TonB-dependent receptor.
 
 
 0.520
SEH56841.1
Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.518
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.