STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI13820.1CubicO group peptidase, beta-lactamase class C family. (386 aa)    
Predicted Functional Partners:
SEI14432.1
Amino acid adenylation domain-containing protein.
 
  
 0.907
SEI14412.1
HxxPF-repeated domain-containing protein.
 
  
 0.864
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.766
SEH59472.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.765
SEI05587.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.755
SEI05603.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.755
SEH65078.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
     
 0.731
SEH65091.1
Chitinase family 18.
     
 0.731
SEI13807.1
Hypothetical protein.
     
 0.682
SEI13813.1
Hypothetical protein.
       0.682
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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