STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI13928.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
SEI05603.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.953
SEI05593.1
Taurine dioxygenase, alpha-ketoglutarate-dependent.
  
 0.935
SEI05577.1
Amino acid adenylation domain-containing protein.
   
 0.930
SEI00231.1
Amino acid adenylation domain-containing protein.
   
 0.926
SEH56323.1
FMN reductase.
  
 0.910
SEI05570.1
Amino acid adenylation domain-containing protein.
  
 0.893
SEI05611.1
Acyl transferase domain-containing protein.
  
 
 0.841
SEH84740.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
 0.795
SEH55488.1
NAD(P)H-dependent FMN reductase.
  
 0.757
SEH74576.1
NAD(P)H-dependent FMN reductase.
  
 0.757
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.