STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS32796.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (330 aa)    
Predicted Functional Partners:
CUS32794.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.960
CUS32798.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.949
CUS32800.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.946
cas4-cas
CRISPR-associated protein Cas4/endonuclease Cas1 fusion; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.803
cas
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.698
CUS32792.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.594
Your Current Organism:
Nitrospira nitrificans
NCBI taxonomy Id: 1742973
Other names: C. Nitrospira nitrificans, Candidatus Nitrospira nitrificans
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