STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001595965_01186Unannotated protein. (201 aa)    
Predicted Functional Partners:
GCA_001595965_01185
Unannotated protein.
 0.997
GCA_001595965_01242
Unannotated protein.
 0.974
GCA_001595965_01187
Unannotated protein.
 
 
 0.952
GCA_001595965_00033
Unannotated protein.
  
 0.860
GCA_001595965_01414
Unannotated protein.
    
  0.859
GCA_001595965_01768
Unannotated protein.
 
 
 0.857
GCA_001595965_01184
Unannotated protein.
       0.758
GCA_001595965_00821
Unannotated protein.
 
 
 0.739
GCA_001595965_01244
Unannotated protein.
 
 
 0.703
GCA_001595965_01243
Unannotated protein.
 
  
 0.547
Your Current Organism:
Polynucleobacter yangtzensis
NCBI taxonomy Id: 1743159
Other names: CIP 110976, DSM 21493, P. yangtzensis, Polynucleobacter sp. MWH-JaK3, Polynucleobacter yangtzensis Hahn et al. 2016, beta proteobacterium MWH-JaK3, strain MWH-JaK3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.