STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2J6PH02Uncharacterized protein. (436 aa)    
Predicted Functional Partners:
A0A2J6PUH4
Uncharacterized protein.
     
 0.811
A0A2J6PDD4
Transcription elongation factor Spt5.
   
 0.734
A0A2J6PUA6
PHD domain-containing protein.
   
  0.733
A0A2J6QBT4
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.733
A0A2J6PFC5
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 0.723
A0A2J6PKM0
Metallothionein-I gene transcription activator.
    
 0.723
A0A2J6PVW9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.723
A0A2J6Q8W3
Insert subdomain of RNA polymerase alpha subunit.
    
 0.723
A0A2J6QB01
RPB5 subunit of DNA-directed RNA polymerase.
    
 0.723
A0A2J6QCV7
RNA polymerase Rpb6.
    
 0.723
Your Current Organism:
Pezoloma ericae
NCBI taxonomy Id: 1745343
Other names: Hymenoscyphus ericae, P. ericae, Pezizella ericae, Pezizella ericae D.J.Read, Pezoloma ericae (D.J. Read) Baral, 2006, Rhizoscyphus ericae, UAMH 6735
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