STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2J6PWA5Glycoside hydrolase family 93 protein. (350 aa)    
Predicted Functional Partners:
A0A2J6QHN2
rRNA processing protein-like protein Bystin.
   
 0.965
A0A2J6Q8T5
Putative ribosome biogenesis protein tsr1 like protein.
   
 0.954
A0A2J6Q5X3
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.952
A0A2J6PHZ9
RIO1-domain-containing protein.
   
 0.943
A0A2J6PL80
Low temperature viability protein.
   
 0.942
A0A2J6QGT7
Alpha-L RNA-binding motif-containing protein.
   
 0.928
A0A2J6QH90
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.910
A0A2J6QQ31
Putative 40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
    
 0.905
A0A2J6QNB3
TRAUB-domain-containing protein.
   
 
 0.901
A0A2J6Q222
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
  0.898
Your Current Organism:
Pezoloma ericae
NCBI taxonomy Id: 1745343
Other names: Hymenoscyphus ericae, P. ericae, Pezizella ericae, Pezizella ericae D.J.Read, Pezoloma ericae (D.J. Read) Baral, 2006, Rhizoscyphus ericae, UAMH 6735
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