STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2J6PXM2ERCC4 domain-containing protein. (693 aa)    
Predicted Functional Partners:
A0A2J6Q7Q3
Putative DNA repair protein Mus81.
  
 
 0.926
A0A2J6PXV2
Glycosyltransferase family 4 protein.
 
      0.614
A0A2J6QIK1
DNA polymeras-like protein subunit delta-2.
    
 0.594
A0A2J6QM10
SMN domain-containing protein.
    
 0.574
A0A2J6PMS3
DNA polymerase.
   
 0.573
A0A2J6Q1A8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.555
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
    
 0.552
A0A2J6Q3I0
Small nuclear ribonucleoprotein G.
    
  0.542
A0A2J6PJC7
Uncharacterized protein.
   
 0.540
A0A2J6QND5
MUS38-like protein.
    
 0.539
Your Current Organism:
Pezoloma ericae
NCBI taxonomy Id: 1745343
Other names: Hymenoscyphus ericae, P. ericae, Pezizella ericae, Pezizella ericae D.J.Read, Pezoloma ericae (D.J. Read) Baral, 2006, Rhizoscyphus ericae, UAMH 6735
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