STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2J6QFB2Uncharacterized protein. (597 aa)    
Predicted Functional Partners:
A0A2J6PR32
L domain-like protein.
    
 
 0.987
A0A2J6QF40
Sm-like ribonucleo protein.
    
 
 0.976
A0A2J6PZQ8
Nuclear cap-binding protein subunit 2.
    
 
 0.964
A0A2J6QBH5
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.961
A0A2J6PP19
LUC7-domain-containing protein.
   
 
 0.960
A0A2J6Q6F5
RRM domain-containing protein.
   
 
 0.960
A0A2J6QFJ4
RNA-binding domain-containing protein.
   
 
 0.958
A0A2J6PIC9
PWI domain-containing protein.
   
 
 0.951
A0A2J6Q8P9
SART-1 protein.
   
 
 0.943
A0A2J6QFY5
ARM repeat-containing protein.
   
 
 0.936
Your Current Organism:
Pezoloma ericae
NCBI taxonomy Id: 1745343
Other names: Hymenoscyphus ericae, P. ericae, Pezizella ericae, Pezizella ericae D.J.Read, Pezoloma ericae (D.J. Read) Baral, 2006, Rhizoscyphus ericae, UAMH 6735
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