A0A0N5CBX8 protein (Strongyloides papillosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N5CBX8

Uncharacterized protein. (122 aa)

Predicted Functional Partners:

A0A0N5B9V6

0.749

A0A0N5CEM8

0.675

A0A0N5BNA1

0.655

A0A0N5C7T6

0.655

A0A0N5BWV6

0.620

A0A0N5C9F9

0.620

A0A0N5BPK1

0.594

A0A0N5BW62

0.534

A0A0N5BDZ4

0.528

A0A0N5B6U6

0.525

Your Current Organism:

Strongyloides papillosus

NCBI taxonomy Id: 174720
Other names: S. papillosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N5B6U6	A0A0N5B9V6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.968
A0A0N5B6U6	A0A0N5BDZ4	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.856
A0A0N5B6U6	A0A0N5BNA1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.945
A0A0N5B6U6	A0A0N5BPK1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Chromo domain-containing protein.	0.613
A0A0N5B6U6	A0A0N5BW62	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H2A; Belongs to the histone H2A family.	0.966
A0A0N5B6U6	A0A0N5BWV6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.813
A0A0N5B6U6	A0A0N5C7T6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	B30.2/SPRY domain-containing protein.	0.943
A0A0N5B6U6	A0A0N5C9F9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.813
A0A0N5B6U6	A0A0N5CBX8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.525
A0A0N5B6U6	A0A0N5CEM8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.962
A0A0N5B9V6	A0A0N5B6U6	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.968
A0A0N5B9V6	A0A0N5BDZ4	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A0N5B9V6	A0A0N5BNA1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A0N5B9V6	A0A0N5BPK1	Uncharacterized protein.	Chromo domain-containing protein.	0.508
A0A0N5B9V6	A0A0N5BW62	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.986
A0A0N5B9V6	A0A0N5BWV6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
A0A0N5B9V6	A0A0N5C7T6	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.999
A0A0N5B9V6	A0A0N5C9F9	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0N5B9V6	A0A0N5CBX8	Uncharacterized protein.	Uncharacterized protein.	0.749
A0A0N5B9V6	A0A0N5CEM8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997