STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptALipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (196 aa)    
Predicted Functional Partners:
OBV37097.1
Lipopolysaccharide export system protein LptC.
 
 0.999
OBV37095.1
Lipopolysaccharide export system ATP-binding protein.
  
 
 0.995
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 0.984
OBV38571.1
Phasin family protein.
  
 0.946
OBV39433.1
Phasin family protein.
  
 0.946
OBV40130.1
Phasin family protein.
  
 0.946
OBV40552.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.887
OBV40909.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.887
lptE
LPS-assembly lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
 
 0.883
fliM
Flagellar motor switch protein FliM.
    
   0.882
Your Current Organism:
Janthinobacterium sp. S32
NCBI taxonomy Id: 1747903
Other names: J. sp. S3-2, Janthinobacterium sp. S3-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.