Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OBV39297.1 | OBV39298.1 | ASR47_1009112 | ASR47_1009113 | Ribosome-associated protein. | Hypothetical protein. | 0.538 |
| OBV39297.1 | OBV39408.1 | ASR47_1009112 | ASR47_1009223 | Ribosome-associated protein. | TIR domain-containing protein. | 0.448 |
| OBV39297.1 | OBV39819.1 | ASR47_1009112 | ASR47_101241 | Ribosome-associated protein. | Hypothetical protein. | 0.448 |
| OBV39297.1 | OBV40128.1 | ASR47_1009112 | ASR47_101443 | Ribosome-associated protein. | Putative conserved protein YaeQ, suppresses RfaH defect. | 0.423 |
| OBV39297.1 | OBV40176.1 | ASR47_1009112 | ASR47_101491 | Ribosome-associated protein. | Outer membrane lipoprotein SlyB. | 0.508 |
| OBV39297.1 | dnaA | ASR47_1009112 | ASR47_102913 | Ribosome-associated protein. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.448 |
| OBV39297.1 | dnaN | ASR47_1009112 | ASR47_102912 | Ribosome-associated protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.572 |
| OBV39297.1 | fumC | ASR47_1009112 | ASR47_1009111 | Ribosome-associated protein. | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.541 |
| OBV39297.1 | hda | ASR47_1009112 | ASR47_101677 | Ribosome-associated protein. | DnaA family protein; Belongs to the DnaA family. | 0.448 |
| OBV39298.1 | OBV39297.1 | ASR47_1009113 | ASR47_1009112 | Hypothetical protein. | Ribosome-associated protein. | 0.538 |
| OBV39408.1 | OBV39297.1 | ASR47_1009223 | ASR47_1009112 | TIR domain-containing protein. | Ribosome-associated protein. | 0.448 |
| OBV39408.1 | dnaN | ASR47_1009223 | ASR47_102912 | TIR domain-containing protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.986 |
| OBV39819.1 | OBV39297.1 | ASR47_101241 | ASR47_1009112 | Hypothetical protein. | Ribosome-associated protein. | 0.448 |
| OBV39819.1 | dnaN | ASR47_101241 | ASR47_102912 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.986 |
| OBV40128.1 | OBV39297.1 | ASR47_101443 | ASR47_1009112 | Putative conserved protein YaeQ, suppresses RfaH defect. | Ribosome-associated protein. | 0.423 |
| OBV40176.1 | OBV39297.1 | ASR47_101491 | ASR47_1009112 | Outer membrane lipoprotein SlyB. | Ribosome-associated protein. | 0.508 |
| dnaA | OBV39297.1 | ASR47_102913 | ASR47_1009112 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Ribosome-associated protein. | 0.448 |
| dnaA | dnaN | ASR47_102913 | ASR47_102912 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.997 |
| dnaA | hda | ASR47_102913 | ASR47_101677 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DnaA family protein; Belongs to the DnaA family. | 0.958 |
| dnaN | OBV39297.1 | ASR47_102912 | ASR47_1009112 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Ribosome-associated protein. | 0.572 |
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