STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tel_11565MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
Tel_11550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.785
Tel_11560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
Tel_11555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
rpoD
RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.695
Tel_11545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.675
Tel_04625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.632
Tel_11540
Mercury transporter MerT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.624
Tel_11530
Mercuric reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.622
Tel_11535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.572
Tel_14305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.486
Your Current Organism:
Tenderia electrophaga
NCBI taxonomy Id: 1748243
Other names: C. Tenderia electrophaga, Candidatus Tenderia electrophaga, Gammaproteobacteria bacterium NRL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.