STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY90DRAFT_4533WD40 repeat-like protein. (306 aa)    
Predicted Functional Partners:
A0A1Y1ZJ57
Leo1-domain-containing protein.
    
 0.998
A0A1Y1ZJT6
TPR-like protein.
    
 0.987
A0A1Y2DRU3
CDC73-domain-containing protein.
    
 0.987
A0A1Y2F222
TPR-like protein.
    
 0.986
A0A1Y2C5G4
Uncharacterized protein.
   
 0.984
A0A1Y1XYI7
Putative RNA helicase.
    
 0.978
A0A1Y2D808
DEAD/DEAH box RNA helicase.
    
 0.978
A0A1Y2FBC2
WD40 repeat-like protein.
  
 
 0.925
A0A1Y2B9E1
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.913
A0A1Y2E9Y1
RNA polymerase Rpb6.
    
 0.902
Your Current Organism:
Neocallimastix californiae
NCBI taxonomy Id: 1754190
Other names: G1, JMRC:SF:12176, N. californiae, Neocallimastix sp. G1, Neocallimastix sp. KS-2015
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