STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WTB2HTH La-type RNA-binding domain-containing protein. (387 aa)    
Predicted Functional Partners:
A0A1Y1VUH1
Uncharacterized protein.
   
    0.672
A0A1Y1X324
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.670
A0A1Y1WRL3
Small nuclear ribonucleoprotein Sm D3.
   
   0.661
A0A1Y1WG98
T-complex protein 1.
   
    0.647
A0A1Y1XEY6
Nop domain-containing protein.
   
   0.643
A0A1Y1WQ09
RNA-binding domain-containing protein.
   
 
 0.553
A0A1Y1X8B1
Small nuclear ribonucleo protein SmF.
   
   0.542
A0A1Y1XPG0
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.528
A0A1Y1X780
Proteasome subunit alpha type.
   
  
 0.505
A0A1Y1X524
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.503
Your Current Organism:
Anaeromyces robustus
NCBI taxonomy Id: 1754192
Other names: A. robustus, Anaeromyces sp. KS-2015, Anaeromyces sp. S4, JMRC:SF:12178, S4
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