A0A1Y1XJF3 protein (Anaeromyces robustus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

A0A1Y1XJF3

Ubiquitin-domain-containing protein. (152 aa)

Predicted Functional Partners:

A0A1Y1VQI1

0.999

A0A1Y1VRI6

0.999

A0A1Y1VSH9

0.999

A0A1Y1VTC1

0.999

A0A1Y1VTL0

0.999

A0A1Y1VUI3

0.999

A0A1Y1VUQ4

0.999

A0A1Y1WIV7

0.999

A0A1Y1WQR2

0.999

A0A1Y1WQW0

0.999

Your Current Organism:

Anaeromyces robustus

NCBI taxonomy Id: 1754192
Other names: A. robustus, Anaeromyces sp. KS-2015, Anaeromyces sp. S4, JMRC:SF:12178, S4

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1VQI1	A0A1Y1VRI6	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L2.	0.998
A0A1Y1VQI1	A0A1Y1VSH9	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
A0A1Y1VQI1	A0A1Y1VTC1	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	L30e-like protein.	0.999
A0A1Y1VQI1	A0A1Y1VTL0	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L34e.	0.997
A0A1Y1VQI1	A0A1Y1VUI3	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.998
A0A1Y1VQI1	A0A1Y1VUQ4	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Putative 60S ribosomal protein L9.	0.998
A0A1Y1VQI1	A0A1Y1WIV7	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
A0A1Y1VQI1	A0A1Y1WQR2	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L16.	0.999
A0A1Y1VQI1	A0A1Y1WQW0	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.998
A0A1Y1VQI1	A0A1Y1XJF3	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Ubiquitin-domain-containing protein.	0.999
A0A1Y1VRI6	A0A1Y1VQI1	60S ribosomal protein L2.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.998
A0A1Y1VRI6	A0A1Y1VSH9	60S ribosomal protein L2.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.998
A0A1Y1VRI6	A0A1Y1VTC1	60S ribosomal protein L2.	L30e-like protein.	0.999
A0A1Y1VRI6	A0A1Y1VTL0	60S ribosomal protein L2.	Ribosomal protein L34e.	0.999
A0A1Y1VRI6	A0A1Y1VUI3	60S ribosomal protein L2.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A1Y1VRI6	A0A1Y1VUQ4	60S ribosomal protein L2.	Putative 60S ribosomal protein L9.	0.999
A0A1Y1VRI6	A0A1Y1WIV7	60S ribosomal protein L2.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
A0A1Y1VRI6	A0A1Y1WQR2	60S ribosomal protein L2.	60S ribosomal protein L16.	0.999
A0A1Y1VRI6	A0A1Y1WQW0	60S ribosomal protein L2.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
A0A1Y1VRI6	A0A1Y1XJF3	60S ribosomal protein L2.	Ubiquitin-domain-containing protein.	0.999

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Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.778

expected number of edges:

15

PPI enrichment p-value:

0.00119

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006188

IMP biosynthetic process

4 of 12

1.55

1.06

0.0049

GO:0006189

De novo IMP biosynthetic process

3 of 11

1.46

0.93

0.0090

GO:0072522

Purine-containing compound biosynthetic process

5 of 33

1.21

0.88

0.0049

GO:1901137

Carbohydrate derivative biosynthetic process

5 of 55

0.99

0.71

0.0062

GO:0034654

Nucleobase-containing compound biosynthetic process

5 of 77

0.84

0.55

0.0141

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:592

Mixed, incl. RNA binding, and IMP biosynthesis enzyme PurP

3 of 8

1.6

0.87

0.0165

CL:725

Nucleoside monophosphate biosynthetic process

3 of 22

1.16

0.57

0.0479

CL:641

Cellular amino acid biosynthetic process, and Nucleoside monophosphate biosynthetic process

5 of 78

0.84

0.51

0.0232

CL:639

Small molecule metabolic process, and Pentose phosphate pathway

7 of 136

0.74

0.48

0.0165

CL:640

Biosynthesis of amino acids, and Nucleotide biosynthetic process

6 of 118

0.73

0.47

0.0203

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00230

Purine metabolism

5 of 33

1.21

1.06

0.00083

map01110

Biosynthesis of secondary metabolites

8 of 166

0.71

0.58

0.00083

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