Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SSIN_0588 | SSIN_0589 | SSIN_0588 | SSIN_0589 | Ribonuclease BN. | Hypothetical protein. | 0.475 |
SSIN_0589 | SSIN_0588 | SSIN_0589 | SSIN_0588 | Hypothetical protein. | Ribonuclease BN. | 0.475 |
SSIN_0589 | SSIN_0591 | SSIN_0589 | SSIN_0591 | Hypothetical protein. | Hypothetical protein. | 0.636 |
SSIN_0589 | SSIN_0592 | SSIN_0589 | SSIN_0592 | Hypothetical protein. | Acetyltransferase, GNAT family. | 0.518 |
SSIN_0589 | obg | SSIN_0589 | SSIN_0590 | Hypothetical protein. | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.650 |
SSIN_0591 | SSIN_0589 | SSIN_0591 | SSIN_0589 | Hypothetical protein. | Hypothetical protein. | 0.636 |
SSIN_0591 | SSIN_0592 | SSIN_0591 | SSIN_0592 | Hypothetical protein. | Acetyltransferase, GNAT family. | 0.671 |
SSIN_0591 | obg | SSIN_0591 | SSIN_0590 | Hypothetical protein. | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.788 |
SSIN_0592 | SSIN_0589 | SSIN_0592 | SSIN_0589 | Acetyltransferase, GNAT family. | Hypothetical protein. | 0.518 |
SSIN_0592 | SSIN_0591 | SSIN_0592 | SSIN_0591 | Acetyltransferase, GNAT family. | Hypothetical protein. | 0.671 |
SSIN_0592 | obg | SSIN_0592 | SSIN_0590 | Acetyltransferase, GNAT family. | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.653 |
obg | SSIN_0589 | SSIN_0590 | SSIN_0589 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein. | 0.650 |
obg | SSIN_0591 | SSIN_0590 | SSIN_0591 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein. | 0.788 |
obg | SSIN_0592 | SSIN_0590 | SSIN_0592 | GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Acetyltransferase, GNAT family. | 0.653 |