STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SSIN_1978Signal recognition particle associated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (110 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle, subunit Ffh SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
  
 0.992
SSIN_1411
Putative tRNA-m1A22 methylase.
  
     0.732
whiA
Cytoplasmic hypothetical protein DUF199, a subgroup; Involved in cell division and chromosome segregation.
  
  
 0.691
SSIN_1977
Transcriptional regulator in cluster with beta-lactamase, GntR family.
       0.690
SSIN_1722
Alkaline shock protein.
 
     0.628
SSIN_1910
Hypothetical protein; Possible functionally linked with Alanyl-tRNA synthetase; Belongs to the UPF0297 family.
  
     0.626
SSIN_1418
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination.
  
    0.624
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.603
SSIN_1795
Hypothetical protein; FIG01118945.
     
 0.578
SSIN_1203
Fibronectin/fibrinogen-binding protein.
  
     0.572
Your Current Organism:
Streptococcus sinensis
NCBI taxonomy Id: 176090
Other names: CCUG 48363, CCUG 48488, DSM 14990, LMG 21517, LMG:21517, S. sinensis, Streptococcus sinensis Woo et al. 2002, strain HKU4
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