SSIN_1981 protein (Streptococcus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SSIN_1981

Hypothetical protein. (147 aa)

Predicted Functional Partners:

SSIN_1980

0.615

SSIN_1982

0.498

ffh

0.475

SSIN_0086

0.427

SSIN_1395

0.424

Your Current Organism:

Streptococcus sinensis

NCBI taxonomy Id: 176090
Other names: CCUG 48363, CCUG 48488, DSM 14990, LMG 21517, LMG:21517, S. sinensis, Streptococcus sinensis Woo et al. 2002, strain HKU4

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SSIN_0086	SSIN_1981	SSIN_0086	SSIN_1981	Hypothetical protein; FIG01115610.	Hypothetical protein.	0.427
SSIN_1395	SSIN_1981	SSIN_1395	SSIN_1981	Alpha-aspartyl dipeptidase Peptidase E; Belongs to the peptidase S51 family.	Hypothetical protein.	0.424
SSIN_1980	SSIN_1981	SSIN_1980	SSIN_1981	Cell surface hydrolase.	Hypothetical protein.	0.615
SSIN_1980	SSIN_1982	SSIN_1980	SSIN_1982	Cell surface hydrolase.	CAAX amino terminal protease family.	0.408
SSIN_1980	ffh	SSIN_1980	SSIN_1979	Cell surface hydrolase.	Signal recognition particle, subunit Ffh SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.634
SSIN_1981	SSIN_0086	SSIN_1981	SSIN_0086	Hypothetical protein.	Hypothetical protein; FIG01115610.	0.427
SSIN_1981	SSIN_1395	SSIN_1981	SSIN_1395	Hypothetical protein.	Alpha-aspartyl dipeptidase Peptidase E; Belongs to the peptidase S51 family.	0.424
SSIN_1981	SSIN_1980	SSIN_1981	SSIN_1980	Hypothetical protein.	Cell surface hydrolase.	0.615
SSIN_1981	SSIN_1982	SSIN_1981	SSIN_1982	Hypothetical protein.	CAAX amino terminal protease family.	0.498
SSIN_1981	ffh	SSIN_1981	SSIN_1979	Hypothetical protein.	Signal recognition particle, subunit Ffh SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.475
SSIN_1982	SSIN_1980	SSIN_1982	SSIN_1980	CAAX amino terminal protease family.	Cell surface hydrolase.	0.408
SSIN_1982	SSIN_1981	SSIN_1982	SSIN_1981	CAAX amino terminal protease family.	Hypothetical protein.	0.498
ffh	SSIN_1980	SSIN_1979	SSIN_1980	Signal recognition particle, subunit Ffh SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	Cell surface hydrolase.	0.634
ffh	SSIN_1981	SSIN_1979	SSIN_1981	Signal recognition particle, subunit Ffh SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	Hypothetical protein.	0.475