STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_0086Ni/Fe-hydrogenase 1 B-type cytochrome subunit. (227 aa)    
Predicted Functional Partners:
SAMN02949497_0088
Hydrogenase small subunit.
 
 0.998
SAMN02949497_0312
Hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.998
SAMN02949497_0313
annotation not available
 
 0.998
SAMN02949497_0304
Nickel-dependent hydrogenase.
 
 0.996
SAMN02949497_0310
Hydrogenase maturation protease.
 
 0.976
SAMN02949497_0308
Hydrogenase expression/formation protein; Belongs to the HupG/HyaE family.
 
  
 0.955
SAMN02949497_0082
Hydrogenase-1 operon protein HyaF.
 
  
 0.950
SAMN02949497_0307
Hydrogenase-1 operon protein HyaF.
 
  
 0.950
SAMN02949497_0305
[NiFe] hydrogenase assembly chaperone, HybE family.
 
  
 0.867
SAMN02949497_2254
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.819
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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