STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_0215Uncharacterized protein involved in exopolysaccharide biosynthesis. (578 aa)    
Predicted Functional Partners:
SAMN02949497_0218
Polysaccharide export outer membrane protein.
 
 0.958
SAMN02949497_0214
Capsular exopolysaccharide family.
 
 
 0.955
SAMN02949497_4049
annotation not available
 
 
 0.942
SAMN02949497_0637
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.932
SAMN02949497_2061
Polysaccharide export outer membrane protein.
 
 0.923
SAMN02949497_0635
Polysaccharide export outer membrane protein.
 
 0.893
SAMN02949497_2874
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.858
SAMN02949497_4062
Uncharacterized nucleotidyltransferase.
 
 0.847
SAMN02949497_0297
Uncharacterized nucleotidyltransferase.
  
 0.827
SAMN02949497_1166
Uncharacterized nucleotidyltransferase.
  
 0.827
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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